Tuesday October 21 : Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Zhao, Z. et al. Nat. Genet. 2006 vol. 38 (11) pp. 1341-7
Suggested by : Thomas Auer
Tuesday October 28 : Murrell, A., Heeson, S. & Reik, W. Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops. Nat. Genet. 36, 889–893 (2004). |
Suggested by : Thomas Auer
Friday October 31 : Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engstrom P, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Mourrain P, Adolf B, Pezeron G, Ellingsen E, Foucher I, Oates AC, Thisse C, Thisse B, Lenhard B and Becker TS (2007). Genomic Regulatory Blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.Genome Research, 17:545-55.
Suggested by : Laurence Ettwiller
Tuesday 4th November : An Abundance of Bidirectional Promoters in the Human Genome, Trinklein N. D et al., Genome Res., 2004, 14: 62-66
Suggested by: Thomas Auer
Monday 10th November : Dispensability of mammalian DNA. Cory McLean and Gill Bejerano. Genome Res., Nov 2008; 18: 1743 - 1751.
Suggested by : Laurence Ettwiller
Thursday, 13th November: Dissection of lin-11 enhancer regions in Caenorhabditis elegans and other nematodes. Marri, S., Gupta, B.P., Dev. Biol., Nov 2008; in press
Suggested by: Thomas Auer
2009
Friday January 23 : Korbel, J., Paired-End mapping reveals extensive structural variants in the human genome, Science, (2007).
Suggested by : Thomas Auer
Friday January 30 : A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006 vol. 125 (2) pp. 315-26.
Suggested by: Michael Eichenlaub
Friday, February 6 : Bourque et al. Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res. (2008) vol. 18 (11) pp. 1752-62
Suggested by: Laurence Ettwiller
Friday, March 6 : Species-specific transcription in mice carrying human chromosome 21. Wilson MD. et al. Science 2008 Oct 17;322(5900):434-8.
Suggested by : Michael Eichenlaub
Tuesday, March 23 : ChIP-seq accurately predicts tissue-specific activity of enhancers. Visel A. et al. Nature 457, 854 (2009).
Suggested by : Michael Eichenlaub
Wednesday, April 1 : Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Kikuta H. et al. Gen Res 2007 vol. 17 (5) pp. 545-55
Suggested by : Dirk Dolle
Friday, July 3 : Automated identification of conserved synteny after whole-genomeduplication. Julian M. Catchen, John S. Conery and John H. Postlethwait. Genome Research May 22, 2009.
Presented by Michael Eichenlaub.
Thursday, July 9 : “An Atomic Model of the Interferon-β Enhanceosome”. Panne D, Maniatis T, Harrison SC. Cell 129, June 15, 2007.
Presented by Dirk Dolle.
Thursday, July 16 : “Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates”. Kassahn KS, Dang VT, Wilkins SJ et al. Genome Research May 13, 2009 (online, DOI: 10.1101/gr.086827.1089).
Presented by Dirk Dolle.
Friday, September 18 : “Identifying Cis-Regulatory Sequences by Word Profile Similarity”. Leung G and Eisen MB. PLoS one September 2009, Volume 4, Issue 9.
Presented by Dirk Dolle.
Tuesday, October 13 : ”Species-specific transcription in mice carrying human chromosome 21″ Wilson et al. Science (2008) vol. 322 (5900) pp. 434-8
Presented by Michael Eichenlaub.
Thursday, October 22 : “Kuwabara et al. Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis. Nat Neurosci (2009) vol. 12 (9) pp. 1097-105″
Presented by Dirk Dolle.
Monday, October 26 : “Brain asymmetry is encoded at the level of axon terminal morphology”
Presented by Anna-Sophia Wahl.
Tuesday, November 03 : Ludwig MZ, Palsson A, Alekseeva E, Bergman CM, Nathan J, et al. (2005) Functional Evolution of acis-Regulatory Module. PLoS Biol 3(4): e93. doi:10.1371/journal.pbio.0030093
Presented by Franziska Gruhl.
Tuesday, November 11 : “Cande et al. Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum”. Development (2009) vol. 136 (18) pp. 3153-60
Presented by Dirk Dolle.
Monday, November 30 :”A simple polymerase chain reaction-based method for the construction of recombinase-mediated cassette exchange donor vectors.” Genetics (2008) vol. 180 (3) pp. 1763-6
Presented by Franziska Gruhl.
2010March 1, 2010 : Zinzen et al. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature (2009) vol. 462 (7269) pp. 65-70. Presented by Franziska
March 15, 2010 : Visel et al. Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice. Nature (2010) pp. Presented by Thomas Auer.
NextHuman-specific gain of function in a developmental enhancer.
Rewiring the retinal ganglion cell gene regulatory network: Neurod1 promotes retinal ganglion cell fate in the absence of Math5.